When it comes to Bioinformatics neither of these two colleges offer any advantage over the other. It would not be possible for you to get a job during on-campus recruitments with a UG degree in bioinformatics. To open up your opportunities, you would have to go for a Master’s degree.
Now coming to the location of both these institutions. Amity University is situated in the NCR region of India and you can expect to have a thrilling and fascinating city lifestyle. The campus of Karunya University is surrounded by hills from all sides. The campus would be a bit laid back and peaceful, giving you plenty of time to reflect and introspect.
Amity University is a well-known institution that everyone knows about, whereas Karunya University is barely known among the student communities of India.